PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48278.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 305aa    MW: 34184.2 Da    PI: 6.3604
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48278.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l +++++ G+g +W + +++ g++R++k+c++rw++yl
       KHN48278.1 14 KGPWSPEEDEKLREYIEKNGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding37.65.2e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
       KHN48278.1  69 GEFSEDEDRIICTLYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.406962IPR017930Myb domain
SuperFamilySSF466898.41E-2811109IPR009057Homeodomain-like
SMARTSM007171.5E-121364IPR001005SANT/Myb domain
PfamPF002495.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-241569IPR009057Homeodomain-like
CDDcd001672.82E-91662No hitNo description
PROSITE profilePS5129421.69663117IPR017930Myb domain
SMARTSM007173.3E-1267115IPR001005SANT/Myb domain
PfamPF002496.9E-1169111IPR001005SANT/Myb domain
CDDcd001672.01E-870113No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDEKLREYIE KNGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNLKHGE FSEDEDRIIC TLYASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMMGM  120
NPSALKKPHQ VNLSPMLQNS TPSSSFKNNH NSYFQPHLPF TGSESISYSS LPSDNYSTFE  180
SLQNYQVSSV FMETSCSSSS DGSCNNNQIN HVKEAELGYV GDGTFGDQII GRLSYLNSGV  240
EDQDTLKLVP SNAGRVSGVT DEETRLWGES PLEYGLEEIK QLISNSSCNN FMLDDSKTGE  300
MVMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312660.0KT031266.1 Glycine max clone HN_CCL_52 MYB/HD-like transcription factor (Glyma13g20510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542525.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A0B2STQ40.0A0A0B2STQ4_GLYSO; Transcription factor RAX3
TrEMBLI1LZ650.0I1LZ65_SOYBN; MYB/HD-like transcription factor
STRINGGLYMA13G20510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-77myb domain protein 36
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]